PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_20018_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 210aa    MW: 22223.1 Da    PI: 9.2887
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_20018_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.6e-123157127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++++tG Ck+G++C+++H++
  Neem_20018_f_1 31 PGEPDCQYYLKTGDCKFGSSCRYHHPR 57
                    5789*********************96 PP

2zf-CCCH38.22.5e-1278103227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +  +C+f++++G Ck+G++CkF H++
  Neem_20018_f_1  78 GVQPCSFYLQNGRCKFGATCKFDHPM 103
                     6789********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-63057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9293058IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-93257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-63559IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-53657IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-676107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.23476104IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-676103IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-978103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-680102IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MPALAGPYPS LPSSAGPSSS GQKEQSFPER PGEPDCQYYL KTGDCKFGSS CRYHHPRDRV  60
LPRANCVLSP LGLPMRPGVQ PCSFYLQNGR CKFGATCKFD HPMGAMRYSP SASSLIESPV  120
TPYPVGSLLS TMAPASSSSD LRPELISGSK KDSLLSRIPS SGSTSSSSIG LIFSQTGSVP  180
LSDLQLSGQS SVPLSSSRST RQGVEVRRSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444253.11e-109hypothetical protein CICLE_v10019968mg
RefseqXP_006479891.11e-109PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W916e-83C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A067HHC81e-109A0A067HHC8_CITSI; Uncharacterized protein
TrEMBLV4TAY91e-109V4TAY9_9R
STRINGVIT_07s0104g01460.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15746914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.29e-66C3H family protein